It seems to be a bug in the FRR that delete isisd configuration completely
router isis VyOS net 49.0001.1920.0200.0011.00 lsp-mtu 1460 redistribute ipv4 connected level-2 ! ! interface eth1 ip router isis VyOS ipv6 router isis VyOS ! interface tun0 ip router isis VyOS ipv6 router isis VyOS !
check
r1# conf t r1(config)# router isis VyOS r1(config-router)# net 49.0001.1920.0200.0011.00 r1(config-router)# lsp-mtu 1460 r1(config-router)# redistribute ipv4 connected level-2 r1(config-router)# ! r1(config-router)# ! r1(config-router)# interface eth1 r1(config-if)# ip router isis VyOS r1(config-if)# ipv6 router isis VyOS r1(config-if)# ! r1(config-if)# interface tun0 r1(config-if)# ip router isis VyOS vtysh: error reading from isisd: Success (0)Warning: closing connection to isisd because of an I/O error! r1(config-if)# ipv6 router isis VyOS Warning: connecting to isisd...failed! isisd is not running r1(config-if)# ! r1(config-if)# end Warning: connecting to isisd...failed! r1# r1#