To me the "show config commands" format is easier to read and compare between configfiles.
However it seems that VyOS doesnt like if the /config/config.boot is in the "commands" format.
Plenty of errors during boot that ends with "Configuration error".
I can however restore the json-format from a backup since it works to login using some of the vyos-accounts that existed before the above attempt of "cp config.cmd config.boot". After restore I just reboot with "sudo reboot now" and the box is back to how it was before my attempt.
So a bug/feature request would be if either the config.boot format can be changed to the commands format or at least that vyos-configd (or whoever is reading the config.boot during boot) can be made compatible with the commands format?