$ cat /etc/cron.d/certbot 0 */12 * * * root test -x /usr/bin/certbot -a \! -d /run/systemd/system && perl -e 'sleep int(rand(43200))' && certbot -q renew --no-random-sleep-on-renew
Out certbot instance is using a different configuration path which should be honored in order to renew the certificates.